rs29877726 SNP Detail

Summary

• ID
  rs29877726
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46092309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACCTACA AAATGGACTC
  AGATGAGACG AGAAGATGAA CAGGAAATGC AGACCCCTTG CACTCACTCT GAGCCACAGG
  AAATCCTGGA GCAGAATTAT AAAGAAACAA CAGTCTGGCC CTAAGACAGA AAAGATGACC
  AATGTAGAAA GAATGAGCAA ACCAAAGCTC TGTGTTGCCA TGGGAATTCA TTAAGAAAAA
  W
  ATATATTTAT TATGTGTGTG GACATTGGAT GAGGTCACAT GCCATCATGT ACCTGTGAAG
  GTCAGAGGAC AACTTGTGGA GCCAGTTCCA TCTTTCTGTT TTTACATAGA TCCCGGGGAC
  CTAACTGGAC ACCAGGCCTG AGTAGAAGCA GCCTTAGCCA CTGAGCCATC TCGCCAGCTC
  TAGATAGGAA TTTTTGTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39128222	mCV24562079	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss148968477	ENSMUSSNP6166924	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29877726					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46092309 () rs orientation: forward

Symbol	Name	Function Class
4930453C13Rik	RIKEN cDNA 4930453C13 gene	1923 bp downstream
Atxn1	ataxin 1	within coordinates
Rr478826	regulatory region 478826	1586 bp distal
Tssr122337	transcription start site region 122337	1862 bp downstream