rs29878252 SNP Detail

Summary

• ID
  rs29878252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53626669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG CCCTCGGCTC CTCCAGGCCC
  R
  GGACCCGGGC CGGCCAGTAC CGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39128139	mCV22986317	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss149017732	ENSMUSSNP4060987	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss324342433	CHEV_13_53568002	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29878252					SNP	A	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53626669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	within coordinates
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	within coordinates
Rr281405	regulatory region 281405	within coordinates
Tssr122586	transcription start site region 122586	79 bp downstream
Tssr122587	transcription start site region 122587	102 bp downstream
Tssr122588	transcription start site region 122588	167 bp downstream
Tssr122589	transcription start site region 122589	189 bp downstream