rs29878362 SNP Detail

Summary

• ID
  rs29878362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC ACAGCGCTGG TGGGGAACGC
  R
  TGGCTGCGGC TGTTGGACTG TCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46349415	mCV25391810	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136974627	ENSMUSSNP2375365	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss323199026	CHEV_9_112137044	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29878362					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063608 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	within coordinates
Gm68368	predicted gene, 68368	485 bp downstream
Rr687420	regulatory region 687420	1549 bp distal
Rr687421	regulatory region 687421	207 bp distal
Rr687422	regulatory region 687422	within coordinates
Rr687423	regulatory region 687423	468 bp proximal
Tssr87517	transcription start site region 87517	289 bp downstream
Tssr87518	transcription start site region 87518	227 bp downstream
Tssr91798	transcription start site region 91798	1412 bp upstream
Tssr91799	transcription start site region 91799	1286 bp upstream
Tssr91800	transcription start site region 91800	1271 bp upstream
Tssr91801	transcription start site region 91801	1254 bp upstream
Tssr91802	transcription start site region 91802	1217 bp upstream
Tssr91803	transcription start site region 91803	1128 bp upstream
Tssr91804	transcription start site region 91804	970 bp upstream
Tssr91805	transcription start site region 91805	51 bp downstream
Tssr91806	transcription start site region 91806	87 bp downstream
Tssr91807	transcription start site region 91807	268 bp downstream
Tssr91808	transcription start site region 91808	290 bp downstream
Tssr91809	transcription start site region 91809	344 bp downstream
Tssr91810	transcription start site region 91810	416 bp downstream
Tssr91811	transcription start site region 91811	602 bp downstream
Tssr91812	transcription start site region 91812	912 bp downstream
Tssr91813	transcription start site region 91813	971 bp downstream
Tssr91814	transcription start site region 91814	1290 bp downstream
Tssr91815	transcription start site region 91815	1314 bp downstream
Tssr91816	transcription start site region 91816	1349 bp downstream
Tssr91817	transcription start site region 91817	1360 bp downstream
Tssr91818	transcription start site region 91818	1379 bp downstream
Tssr91819	transcription start site region 91819	1400 bp downstream
Tssr91820	transcription start site region 91820	1426 bp downstream