rs29878394 SNP Detail

Summary

• ID
  rs29878394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100896987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAGGTT GGCCCTGAAC
  TTGCTATGCA TCAACTCTGC AGCTGAGGAC AGCCTTGAAC GTCAGATTTT CGGCCTCTAC
  TTACTCAGTG CTAGGATGAC AAGGACCTGC CACCATGTAC AGTTCACGTG GGCTGGGGGT
  CACAGCCAGG GCTTTGTGCC TGCCCTGTGC ACTATGTCCC CAGCACGCTT ACACTTATGC
  Y
  ACATCATCTA ATTTACTGAG CACCTACTAG TCCCCAGCAA AGAGTGCTCC ATCTCTGTTT
  CCCACTGTCA AGTAGGCGGC AGCCTTGCTT CCCATAATGC TGAGTGGTAT GTCCAGTGTT
  CACGTATGGG TTCCCAGGAT AGCTTTTTTT TTCCCTTTTT AAATTAATTT ATTTATTATA
  TATAAGTACA TTGTAGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39128530	mCV25200984	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss52685825	NES15521467	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		C	T	T	T	C	T	T	C	C
ss145091291	ENSMUSSNP6195664	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29878394					SNP	T	T	C	T	T	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685825	NES15521467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100896987 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates