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rs29878394 SNP Detail
Summary
  • ID
    rs29878394
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:100896987 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCCTAGGTT GGCCCTGAAC
    TTGCTATGCA TCAACTCTGC AGCTGAGGAC AGCCTTGAAC GTCAGATTTT CGGCCTCTAC
    TTACTCAGTG CTAGGATGAC AAGGACCTGC CACCATGTAC AGTTCACGTG GGCTGGGGGT
    CACAGCCAGG GCTTTGTGCC TGCCCTGTGC ACTATGTCCC CAGCACGCTT ACACTTATGC
    Y
    ACATCATCTA ATTTACTGAG CACCTACTAG TCCCCAGCAA AGAGTGCTCC ATCTCTGTTT
    CCCACTGTCA AGTAGGCGGC AGCCTTGCTT CCCATAATGC TGAGTGGTAT GTCCAGTGTT
    CACGTATGGG TTCCCAGGAT AGCTTTTTTT TTCCCTTTTT AAATTAATTT ATTTATTATA
    TATAAGTACA TTGTAGCTGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss39128530 mCV25200984 ABI CRAMUS_MOUSE f SNP T C T T
ss52685825 NES15521467 PERLEGEN MM_PANEL2 f SNP T C T T C T C T T T C T T C C
ss145091291 ENSMUSSNP6195664 ENSEMBL ENSEMBL_Sanger f SNP T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs29878394 SNP T T C T T C T T C T T T C T T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52685825 NES15521467 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:100896987 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cenph centromere protein H within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory