rs29878746 SNP Detail

Summary

• ID
  rs29878746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAT GTTTTGATTT TTGTAATCAC
  Y
  AGTTCTGACA CTTCCACTTT TCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45373516	mCV22515895	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss147245671	ENSMUSSNP6431757	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320462291	CHEV_2_113871729	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29878746					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876474 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1289 bp downstream
Rr562815	regulatory region 562815	283 bp distal
Rr562816	regulatory region 562816	212 bp proximal
Tssr600	transcription start site region 600	1569 bp downstream
Tssr601	transcription start site region 601	1579 bp downstream
Tssr19429	transcription start site region 19429	1291 bp upstream
Tssr19430	transcription start site region 19430	1386 bp upstream
Tssr19431	transcription start site region 19431	1466 bp upstream
Tssr19432	transcription start site region 19432	1562 bp upstream
Tssr25660	transcription start site region 25660	1318 bp downstream
Tssr25661	transcription start site region 25661	1335 bp downstream
Tssr25662	transcription start site region 25662	1392 bp downstream
Tssr25663	transcription start site region 25663	1455 bp downstream
Tssr25664	transcription start site region 25664	1485 bp downstream
Tssr25665	transcription start site region 25665	1593 bp downstream