rs29878865 SNP Detail

Summary

• ID
  rs29878865
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70340078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAGCTTA TTACCAACTC
  AACATACAGT CTGAGTAACT AATTATTATA CTGCATTGCT AAAGAATACA AATTTTGTGT
  ACATTAAGTA CAGAGAATTT AAAAGTAATT GTTGACCTGT GGTGGATTAA ATTCATGGGT
  GCAGAAATTC ACAGATTTGG AGGACTGGCT TTATCGTTTG ATTGAGATGA CTTCTTCAAA
  M
  GTGCTTTAAT GCTAAGAAAA AAAACCCATG AAAGCCTTTG ATGACACTCC AGTGTTGGCT
  GAGAAGTGTT CTTTCTGTTA GGAAAGGCAG CCACATTTTT CAATTTAAGT GAAAACCCAG
  CCTATCGTAT TGGATCTGAG TTCAGGTAAT GAAGAATATT TTGAAGTATC TGAGGTTTTT
  TTTTTTTTTT TTTTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47890035	NES11935856	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29878865					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47890035	NES11935856	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70340078 () rs orientation: forward

Symbol	Name	Function Class
Fam13c	family with sequence similarity 13, member C	within coordinates
Gm29783	predicted gene, 29783	632 bp downstream
Gm66439	predicted gene, 66439	1515 bp downstream
Rr228592	regulatory region 228592	1124 bp proximal