rs29878948 SNP Detail

Summary

• ID
  rs29878948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56706425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TACCGGCAGC AAGGGAATGA
  R
  AAAAGAACAG ACCCACAGGT AGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46349612	mCV25255164	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A		G
ss47713016	NES11323731	PERLEGEN	MM_PANEL2	f	SNP			G	A	A	G		A	G	G	A		A	G	G	G		G
ss136515326	ENSMUSSNP2789817	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322971059	CHEV_9_56646948	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29878948					SNP	G	G	G	A	A	G	A	A	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713016	NES11323731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56706425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	1711 bp distal
Gm31586	predicted gene, 31586	734 bp downstream
Gm47235	predicted gene, 47235	within coordinates
Rr679505	regulatory region 679505	1789 bp distal
Rr679507	regulatory region 679507	909 bp distal