rs29878980 SNP Detail

Summary

• ID
  rs29878980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50672140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAAATCAG TGAGGAAATG AACTCCAGAA AGCTAGAGCT
  GTGTTGTCTG GAAATCAGCA GTTCAGTTCA TAGGTCAGCA GGCAGCGGCA GCTCCATCTG
  R
  TTCTCTATTC CTACTCCATT AGTGGCCTGA AATAACAATT GTTCTACTAG ACCTTGTGTG
  GTGTAGGGAT TGGCTAGGGC CACTTGGTGA TAGCCTTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46349332	mCV25205960	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss47708420	NES11321142	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G		G	G	A	A		G	G	G	A		A
ss322959949	CHEV_9_50568945	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29878980					SNP	G	G	A	G	G	G	A	G	G	A	A	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47708420	NES11321142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50672140 () rs orientation: forward

Symbol	Name	Function Class
Cfap68	cilia and flagella associated protein 68	534 bp downstream
Gm67659	predicted gene, 67659	within coordinates