rs29879450 SNP Detail

Summary

• ID
  rs29879450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6242680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCTGGG GCTAGAGTTG
  GAACTCTGGT AGTGTGTTTG CTTAGAAAGC AGGAGGCCCT GGCTTCAACC ACCCCCTGCA
  CTTCAAAAAT AGATGACTTA GCATTCCCTT TTCAGAAGAT AAATACCACA AAAACTCTAT
  GTGGAAATGG CTCTGAGGTT CTGCAAGGAA AAACTTCAGT GACGATAAGA AACCTTTCTT
  Y
  TGGCTTCCAG ACTTTGCTGG GTAAATGAAT GGTGGGACTA TGGACACCTC CCTGACCCCT
  GAATTTGCTG GAACATTCTA GCACCTCTAG AAACAAATAG ATCCAGCTTG ATTGGCTTTC
  TGCAATGGAG AAGAGCACAA TTGCAGGGGA ACAGTGGAGA ATCTTAGAAA TAAAGAAAAC
  AGGGGCATTA TCACAGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48396588	NES12265126	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29879450					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396588	NES12265126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6242680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	966 bp distal
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	1156 bp upstream
Rr346583	regulatory region 346583	521 bp proximal
Rr349615	regulatory region 349615	721 bp proximal
Rr349616	regulatory region 349616	1321 bp proximal
Rr353008	regulatory region 353008	79 bp distal
Tssr152353	transcription start site region 152353	1466 bp upstream
Tssr152354	transcription start site region 152354	1373 bp upstream
Tssr152355	transcription start site region 152355	1198 bp upstream
Tssr152356	transcription start site region 152356	1130 bp upstream