rs29879685 SNP Detail

Summary

• ID
  rs29879685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70340918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATACTT GCGACATGGG
  TACAGCCACT CCTTCCGCTG CTGCTTCTTG GTCTTCAGCT TCTCCTCGTG CTTGGTGAGC
  TGGCAGTGGC GCATGGCTCT AGTCTTCTTG GGTCGCAGGT CCAGGGCCTG GTCTTCTTGC
  CCTTGTAGAA TTTCCTGAGG TTTTCTTTTG GAGTCTGGTT AAAGGCAGTG AGGACTTGGG
  Y
  GATGGATTTG CGTACGACTC ATATCTTGGG GAGCTTGGAC AAGGCGCTGC CTGTCACATT
  GGCAACTCGA AGCTGGGACA GTTCCACCTT CAGACGGCCC AGTTGTTTCA ACAGCTCCTC
  CTCCTCCTTG CCGAGTAGGC CTCAGTCTTA ATCTTAGCCA TTGCTGCGTT GTTCACGGCT
  GAGGCTGCCT GATTTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47890047	NES11935794	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29879685					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47890047	NES11935794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70340918 () rs orientation: forward

Symbol	Name	Function Class
Fam13c	family with sequence similarity 13, member C	within coordinates
Gm29783	predicted gene, 29783	within coordinates
Gm66439	predicted gene, 66439	675 bp downstream
Rr216098	regulatory region 216098	1483 bp proximal
Rr228592	regulatory region 228592	284 bp proximal