rs29879907 SNP Detail

Summary

• ID
  rs29879907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124193514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAACCCCGAG TGCTGCTTTT GTTTTATATA AACTGGTAGA AAGAAGATTG TCCTGAAGAC
  AAACCTTACT TATGTCATCA GTATGGAAAA TTTGTGCTGG TCCCCAGCTA GAAGCTTTAC
  CTCTAATGTC TAGAATTCAA GTTGCTAGAA GGTACCCTAC ATGGTACCAG AAGAAAGGCT
  AAAGGGAATA CAGATTAATG TATCTTCTTA CAAAATTGTC CCTCATCCAA GCCAAAAAGA
  AATGTGAAGA GGTGGTAGGA AAGATCTTGA GAGTCAAAAG ATGAGGAAGT TGGCTGGAAA
  Y
  ACAAATATTC TAGAAAGGGA ATGGGTAGAC CAAAATGTCT TATGAATATG ACTCCAAAAA
  TACAATCAGA GGAAGGATCA CTATACTATG CATGCTAGTA TGGAAGGAAG AAAGGTCACA
  AAGCTTCTAG CCCTCACAGT CATTTACAGG AAACTTTAAA TATGGGAATG GGACAGGTTG
  GCATTGCAAG AGAAAGGAAC AAAGATTAGC CATGTAGTAC CAAGTAATCA GACACCAGAA
  CATAAAAGTA TGCAATTTTA CATGGTCTCT ACAGTTTATA TTTCAAAATG TATATACAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46349339	mCV24426978	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss134041076	ENSMUSSNP1190065	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29879907					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124193514 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	1611 bp downstream
Gm20783	predicted gene, 20783	993 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	1898 bp upstream
Tssr3103	transcription start site region 3103	1972 bp upstream
Tssr3104	transcription start site region 3104	1880 bp upstream
Tssr3105	transcription start site region 3105	1770 bp upstream