rs29880183 SNP Detail

Summary

• ID
  rs29880183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75987228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TCTGACAGGA GTTTTCTCTT
  Y
  GACTTGCTTA TCTACCTCAG CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39128079	mCV22680304	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss52665268	NES15473313	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T		C	T	T	C		T
ss144639066	ENSMUSSNP5665609	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss324437223	CHEV_13_75976557	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29880183					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665268	NES15473313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75987228 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	776 bp upstream
Rr482792	regulatory region 482792	1249 bp distal
Rr482793	regulatory region 482793	269 bp proximal
Tssr120401	transcription start site region 120401	765 bp upstream
Tssr120402	transcription start site region 120402	788 bp upstream
Tssr120403	transcription start site region 120403	893 bp upstream
Tssr120404	transcription start site region 120404	962 bp upstream