rs29880229 SNP Detail

Summary

• ID
  rs29880229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAGCCT CAGCAACACT
  GGGCACCTCG CATGTACTGG GGCCTTAATG AGGAAAACAT CTCTGGGAAA CCTGCTACCA
  CTCAGTCGAT GGGTCGATGT CAGTAAGCCA CTGGCAAGGT CAGCCCCACA GAGACAGCCA
  CATGTTTGAG GGCAGCAACA TGTGGGAACT GGACAAAGGC CTCCAGTAAC AAAGCACACA
  R
  CCGACAGTGA GCAGCAGGAC CCTCCCACCC CTCGAGTCAG GACAGTTGGA GTCCTTGCTG
  GGTTCCGTGG ACAGTGTTCA CCATGTTATA ACACTTTAGT TCTGGGCTGC CAAACTTGAT
  TTTATTCAAA TCAGAACCTA TGGCTGCTGG TGGCATGGTG GGTCTGTGTG ACCATCTAAG
  GAGTGAGCAT AGTGTCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47391431	NES11508743	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G		G
ss322503682	CHEV_8_13038574	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29880229					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391431	NES11508743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088574 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1242 bp distal
Rr659844	regulatory region 659844	726 bp distal
Rr659845	regulatory region 659845	within coordinates
Rr659846	regulatory region 659846	1980 bp proximal
Tssr76325	transcription start site region 76325	1271 bp downstream
Tssr76326	transcription start site region 76326	1222 bp downstream
Tssr76327	transcription start site region 76327	1212 bp downstream
Tssr76328	transcription start site region 76328	1184 bp downstream
Tssr76329	transcription start site region 76329	736 bp downstream
Tssr76330	transcription start site region 76330	589 bp downstream
Tssr76331	transcription start site region 76331	729 bp upstream
Tssr76332	transcription start site region 76332	752 bp upstream
Tssr76333	transcription start site region 76333	784 bp upstream
Tssr76334	transcription start site region 76334	795 bp upstream
Tssr76335	transcription start site region 76335	963 bp upstream