rs29880425 SNP Detail

Summary

• ID
  rs29880425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6242024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAAAA AGAAAGATTA
  CTGATGCAAC CTTGGGTTTT ATTTTGTTTC TGTTTTAAAT CGCTTTGCCA AAACCGGGGA
  GATTTGAGTT AAGGGTGGGG CATGGCCGGG GTGCAGCAGT AATGCACCCC GCCCTGCGAG
  CCTGGGAGCT TTATTCAGAC AAAGCAGAGA AAGGGGAAGC TTCTTTCAAG CAATGAAAAA
  S
  TTTCCCAAGC GATACGGAAC AGCTAGGTGG GATGGAAGAA GAACCTACCC TCATGTGTCT
  CCTCTAGCTG CCCAGGGCTT GACATCACAC AGGTGAGCCA CAGGAGCCCA AAGGTATTTG
  GTAAATCTGA GGTCCCACTT CTCCGACCAA TGGGAAACTT CACTTAGCTG CAACACCAAA
  GGAATGGTGT TGCAGCACCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48396593	NES12265184	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29880425					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396593	NES12265184	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6242024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	310 bp distal
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	500 bp upstream
Rr346583	regulatory region 346583	1177 bp proximal
Rr349615	regulatory region 349615	1377 bp proximal
Rr349616	regulatory region 349616	1977 bp proximal
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	810 bp upstream
Tssr152354	transcription start site region 152354	717 bp upstream
Tssr152355	transcription start site region 152355	542 bp upstream
Tssr152356	transcription start site region 152356	474 bp upstream