rs29880427 SNP Detail

Summary

• ID
  rs29880427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6241699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAGTGCC CAGGCCGGCG
  GCAAACTGGG CGGGCGGGAG GAACACTGCG CAGGCGCGGG GCGATGCCCA GCAGCCAATC
  CTTGCCCGCG CCGGGCCGCA GGCTTTGCCT GGCTCCACCT CAGCTGCAGG TTTGGGGCTT
  CAGATCGAGT TTTCCTGCAA GTTGAGTAGC GCCAAGGCCG CTGCAGAATT CCTCAGAGCA
  Y
  CGGAAGGTTT ACTTATCTTT TTCTTTGGAG GAGTTTGTTT TAACCACTTA ATGGTGGTGT
  TCAATTTTGT ATAAGGCCAG ATCCCTAAAA AAAAAAAAAA AGGGGCTTTC ATTTTGGCCT
  TAGAGAAAAA AAAAAGAAAG ATTACTGATG CAACCTTGGG TTTTATTTTG TTTCTGTTTT
  AAATCGCTTT GCCAAAACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48396595	NES12265182	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29880427					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396595	NES12265182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6241699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	175 bp upstream
Rr346583	regulatory region 346583	1502 bp proximal
Rr349615	regulatory region 349615	1702 bp proximal
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	485 bp upstream
Tssr152354	transcription start site region 152354	392 bp upstream
Tssr152355	transcription start site region 152355	217 bp upstream
Tssr152356	transcription start site region 152356	149 bp upstream