rs29880430 SNP Detail

Summary

• ID
  rs29880430
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6241456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCGCCGGC AGCCTGCGCC
  CGAAGTTCAC TTCCGCTCCA TCATGGCGGC CAAGGCGGCG GCGCCCACAG AGCCTCGATG
  CTCCTCGGCG TCTCCCTCAC CGGCCTCCAC AGGCTGCGGG GACTGGCGAG CGGCTCCTTC
  TTTTCTTTTC GGGAAGGACA GCCGAGGCCT AGGGCTCGGC CCACTATCCT GTCCCGGCAG
  S
  TCGCCGGCTT CCCGGCCAGC TGACGCGCGC ACCCTCCAAA GGCCTTAGTG CCCAGGCCGG
  CGGCAAACTG GGCGGGCGGG AGGAACACTG CGCAGGCGCG GGGCGATGCC CAGCAGCCAA
  TCCTTGCCCG CGCCGGGCCG CAGGCTTTGC CTGGCTCCAC CTCAGCTGCA GGTTTGGGGC
  TTCAGATCGA GTTTTCCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48396598	NES12265179	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	G		C	C	G	C
ss146582133	ENSMUSSNP5779216	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29880430					SNP	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396598	NES12265179	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6241456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	within coordinates
Rr346583	regulatory region 346583	1745 bp proximal
Rr349615	regulatory region 349615	1945 bp proximal
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	242 bp upstream
Tssr152354	transcription start site region 152354	149 bp upstream
Tssr152355	transcription start site region 152355	15 bp downstream
Tssr152356	transcription start site region 152356	30 bp downstream