rs29880432 SNP Detail

Summary

• ID
  rs29880432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCCCA GGTGGGGGAG
  TGTCCAGAAT GAGAAACAAG ACACCTCCCA GCTGCCAAGC TTAGTACTGG GGTGGGGGTG
  ATCCTCGAAT CGTCGCGGAG TCTCCTGAAC ACTGCTCCTT CCTCCCTGGT CGTCTGAACC
  CGCAAACCCG GCTCGGGAGA GCGAGCACTC CCTGCTCCCT CTGGGCTTTG CGACCGGCCA
  Y
  GTCCCAGAGC TCACCGTCCT GCCCGACCCC ACGTGACATG GGGACAGGGG CCACTCACCG
  CGATCATCAC CGTGTCTTCT CCCTGGAATT TGGCGACGTA CTTATCGCCG CGGTTCACTT
  CAGATTCGTT GAGAGGTCTG AAGCGACACA TCACTTTGAT GTTGCACTCC GCCGGGTCCG
  CCATCTTTCT GGAAGCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48396601	NES12265174	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29880432					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396601	NES12265174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	241 bp downstream
Tssr152354	transcription start site region 152354	315 bp downstream
Tssr152355	transcription start site region 152355	548 bp downstream
Tssr152356	transcription start site region 152356	563 bp downstream