rs29880433 SNP Detail

Summary

• ID
  rs29880433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTTCTG ACACTTATTT
  GGCCCAATCT AAATCCACTT ATGACATTAG AGAGAACTCT AATTTCAAAG AAAAGCCACT
  AGTTCTTTTT ACAGGCTCCA ATTTCCCACT TATTACATGA AAAGTTGAGA GGGAGAACAT
  TTAAGAAACA CAAACACACA CACACACACG GATGAGCGTG CACTAAACTA GCTCCTGGGA
  Y
  GCAGCCTCCA GAGCCCCAGG TGGGGGAGTG TCCAGAATGA GAAACAAGAC ACCTCCCAGC
  TGCCAAGCTT AGTACTGGGG TGGGGGTGAT CCTCGAATCG TCGCGGAGTC TCCTGAACAC
  TGCTCCTTCC TCCCTGGTCG TCTGAACCCG CAAACCCGGC TCGGGAGAGC GAGCACTCCC
  TGCTCCCTCT GGGCTTTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48396602	NES12265172	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T		C	T	T	C		T
ss325520793	CHEV_18_6240712	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29880433					SNP	T	C	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396602	NES12265172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	450 bp downstream
Tssr152354	transcription start site region 152354	524 bp downstream
Tssr152355	transcription start site region 152355	757 bp downstream
Tssr152356	transcription start site region 152356	772 bp downstream