rs29880593 SNP Detail

Summary

• ID
  rs29880593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101865385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TCATATGATG ACAGATCTCC
  Y
  CAGACCATGC TCCCAAGCTC TAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46350894	mCV23562195	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136869324	ENSMUSSNP4095880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323155273	CHEV_9_101890516	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29880593					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101865385 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	1074 bp upstream
Gm69124	predicted gene, 69124	975 bp upstream
Tssr86718	transcription start site region 86718	1007 bp upstream