rs29880801 SNP Detail

Summary

• ID
  rs29880801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75296717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA GAAGGGGCAT GCCGTGCAGG
  Y
  GAGACGGCGG ACCTTCCCTG AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46349823	mCV23593168	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss47737270	NES11305962	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C		C	C		T
ss136640763	ENSMUSSNP3498027	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss323008202	CHEV_9_75237242	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29880801					SNP	T	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737270	NES11305962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75296717 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90535	transcription start site region 90535	1946 bp upstream
Tssr90536	transcription start site region 90536	1537 bp upstream
Tssr90537	transcription start site region 90537	1462 bp upstream
Tssr90538	transcription start site region 90538	1434 bp upstream