rs29880914 SNP Detail

Summary

• ID
  rs29880914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70341060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGAATT TCCTGAGGTT
  TTCTTTTGGA GTCTGGTTAA AGGCAGTGAG GACTTGGGCG ATGGATTTGC GTACGACTCA
  TATCTTGGGG AGCTTGGACA AGGCGCTGCC TGTCACATTG GCAACTCGAA GCTGGGACAG
  TTCCACCTTC AGACGGCCCA GTTGTTTCAA CAGCTCCTCC TCCTCCTTGC CGAGTAGGCC
  Y
  CAGTCTTAAT CTTAGCCATT GCTGCGTTGT TCACGGCTGA GGCTGCCTGA TTTGGGAGAG
  CTATTTATTT ATTTTTTATT AATCATTCCA TTCGTTTACA CCTCAAATGA TATCCCACTT
  CCCAGTTTCC CCCTCCACAA GCCTCCCCAT CCCACAACCA CCCTCTCCTC CCTCCCCTTT
  GCCTCTATGA GTGTGCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47890061	NES11935808	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29880914					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47890061	NES11935808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70341060 () rs orientation: forward

Symbol	Name	Function Class
Fam13c	family with sequence similarity 13, member C	within coordinates
Gm29783	predicted gene, 29783	within coordinates
Gm66439	predicted gene, 66439	533 bp downstream
Rr216098	regulatory region 216098	1341 bp proximal
Rr228592	regulatory region 228592	142 bp proximal