rs29881393 SNP Detail

Summary

• ID
  rs29881393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110564301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATAATT TTTGTCATAA
  TTTTGTCATA ATTTTTGTCA TAATTGATTA TTCTGATTGT TCTTGCTGTC TCTATATATC
  CTGCTTGAAA CCATCATTCC ATGAGTGGAG AAATGGGAAT AATTTTAGTC TTCCAAAGGC
  TCTGTCCTTC GAGCCATGAA GTATCATTCT CTGTCTTCCC TCTGTCTGGG TTTTCAATGA
  W
  GTCTTATTTT CTGCCCTGAG CAGAGCATCA GTTTCAGAAC ATAAGGAGGC AGAATAGACA
  TCACAGCTCA GTTTTCTCAT CCTCATTTTT GCTATTCAGA ACATGAATTA TCCTTTTCCC
  TCTTTCCTAC AGCCAAACAT TAAATTTCTC ATTCATGTGA AAATTTTGTA CTGTACCTTT
  GTTCTATATA TCTAGTCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891163	NES10709884	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29881393					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891163	NES10709884	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110564301 () rs orientation: forward

Symbol	Name	Function Class
Rr583481	regulatory region 583481	518 bp proximal