rs29881397 SNP Detail

Summary

• ID
  rs29881397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164908594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA GGAGTGAGAC CAAGAGGCAG
  Y
  TTGGGGTACA GTACCTTAGC TCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45373734	mCV23187166	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148234664	ENSMUSSNP380711	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320607401	CHEV_2_164892174	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29881397					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164908594 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21710	transcription start site region 21710	1735 bp downstream
Tssr21711	transcription start site region 21711	1672 bp downstream
Tssr21712	transcription start site region 21712	1649 bp downstream
Tssr21713	transcription start site region 21713	955 bp downstream
Tssr21714	transcription start site region 21714	within coordinates
Tssr21715	transcription start site region 21715	31 bp upstream
Tssr21716	transcription start site region 21716	85 bp upstream
Tssr21717	transcription start site region 21717	172 bp upstream
Tssr21718	transcription start site region 21718	218 bp upstream
Tssr21719	transcription start site region 21719	309 bp upstream
Tssr21720	transcription start site region 21720	512 bp upstream
Tssr21721	transcription start site region 21721	555 bp upstream
Tssr21722	transcription start site region 21722	1425 bp upstream
Tssr27603	transcription start site region 27603	1290 bp upstream