rs29881464 SNP Detail

Summary

• ID
  rs29881464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAGCTC GATGTTCTGT
  ATACTGAGGC AATCTTATCC AGTCACTTTT AATCTTGAGC TCAAAATGCT GTTTTCAGAG
  AACCTGCAAT GCTAGATATA AAAAACCCTT TCAAGTTTCT CAAATAATAA TCAATCAGCT
  CAGTTACATT TTCCACTACA AAGGAGTATT GCTTCCTCTC AGATTACCAT AATCAATTTC
  Y
  GTCAAGATAG ACTGTATTAA CATGAATCTA ATAATGGTGA TTCAAGCCCC ATTGTAAGGT
  CTTTACAACA CTATGTCTCG GCTATAGCTA TCTTTCCTAC AATGTTAAAA CACGGTAAAG
  AATGAAATTC TAGATCTTTC TGACACTTAT TTGGCCCAAT CTAAATCCAC TTATGACATT
  AGAGAGAACT CTAATTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48396603	NES12265170	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	T	T	T	T		T	T	T	T		T
ss325520792	CHEV_18_6240379	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29881464					SNP	C	T	C	C	T	C	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396603	NES12265170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	301 bp proximal
Gm41664	predicted gene, 41664	298 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	783 bp downstream
Tssr152354	transcription start site region 152354	857 bp downstream
Tssr152355	transcription start site region 152355	1090 bp downstream
Tssr152356	transcription start site region 152356	1105 bp downstream