rs29881465 SNP Detail

Summary

• ID
  rs29881465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCAGTA CTATCTTCAG
  GCTAAAATGT TTTCACTCAT CAATGGCCAG TCTCCTGTGA CCTCTCTGCC CTATTTCTAA
  ATTAAGTAGC TCAAACAATA TACTAAATAT AGATTACTAC TCAAGAACAA ACAATTTCGA
  GTAACAACTG ACATTAACAA TTGAATCCTA ATAGCAATAC CCATGGCATC ATCACTAATG
  R
  TGAATTTACT TGTTAGTTTA GCTCGATGTT CTGTATACTG AGGCAATCTT ATCCAGTCAC
  TTTTAATCTT GAGCTCAAAA TGCTGTTTTC AGAGAACCTG CAATGCTAGA TATAAAAAAC
  CCTTTCAAGT TTCTCAAATA ATAATCAATC AGCTCAGTTA CATTTTCCAC TACAAAGGAG
  TATTGCTTCC TCTCAGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48396604	NES12265167	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A	A	A		A	A	A	A		A
ss325520789	CHEV_18_6240164	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29881465					SNP	G	G	A	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396604	NES12265167	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	516 bp proximal
Gm41664	predicted gene, 41664	513 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	998 bp downstream
Tssr152354	transcription start site region 152354	1072 bp downstream
Tssr152355	transcription start site region 152355	1305 bp downstream
Tssr152356	transcription start site region 152356	1320 bp downstream