rs29881467 SNP Detail

Summary

• ID
  rs29881467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGAAACA AAACACCCCC
  CAAAGAACTG GCCTGATAGT CTTCACACAG CAGTAATAGT TTTTTTTCTA CCAAAACCCT
  ACCGGGAGGA TACACTACTA ACACATTCAA TTTCCGAAAA CTCAACTTTG AAAACCTTCA
  CATTAACACA CCCTCTAGAG AACTTCAGTA CTATCTTCAG GCTAAAATGT TTTCACTCAT
  Y
  AATGGCCAGT CTCCTGTGAC CTCTCTGCCC TATTTCTAAA TTAAGTAGCT CAAACAATAT
  ACTAAATATA GATTACTACT CAAGAACAAA CAATTTCGAG TAACAACTGA CATTAACAAT
  TGAATCCTAA TAGCAATACC CATGGCATCA TCACTAATGA TGAATTTACT TGTTAGTTTA
  GCTCGATGTT CTGTATACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48396606	NES12265164	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	C	C	C	C		C	C	C	C		C
ss325520787	CHEV_18_6240004	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29881467					SNP	T	C	T	T	C	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396606	NES12265164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	676 bp proximal
Gm41664	predicted gene, 41664	673 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	1158 bp downstream
Tssr152354	transcription start site region 152354	1232 bp downstream
Tssr152355	transcription start site region 152355	1465 bp downstream
Tssr152356	transcription start site region 152356	1480 bp downstream