rs29881468 SNP Detail

Summary

• ID
  rs29881468
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6239959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTATACA GAGAAATCCT
  GTCTCGAAAA AGAAAAAGAA AAAAACAAAA CGAAACAAAA CACCCCCCAA AGAACTGGCC
  TGATAGTCTT CACACAGCAG TAATAGTTTT TTTTCTACCA AAACCCTACC GGGAGGATAC
  ACTACTAACA CATTCAATTT CCGAAAACTC AACTTTGAAA ACCTTCACAT TAACACACCC
  W
  CTAGAGAACT TCAGTACTAT CTTCAGGCTA AAATGTTTTC ACTCATCAAT GGCCAGTCTC
  CTGTGACCTC TCTGCCCTAT TTCTAAATTA AGTAGCTCAA ACAATATACT AAATATAGAT
  TACTACTCAA GAACAAACAA TTTCGAGTAA CAACTGACAT TAACAATTGA ATCCTAATAG
  CAATACCCAT GGCATCATCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48396607	NES12265162	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	A	T	T	T	T		T	T	T	T		T
ss325520786	CHEV_18_6239957	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29881468					SNP	A	T	A	A	T	A	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396607	NES12265162	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6239959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	723 bp proximal
Gm41664	predicted gene, 41664	720 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	1205 bp downstream
Tssr152354	transcription start site region 152354	1279 bp downstream
Tssr152355	transcription start site region 152355	1512 bp downstream
Tssr152356	transcription start site region 152356	1527 bp downstream