rs29881469 SNP Detail

Summary

• ID
  rs29881469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6239861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGGTG GCACAGGCCT
  TGAATCCCGA CTCTCAGGAG GCAGAGGCAG GCGGATTTCT GAGTTCAAGA CCAGCCTGGT
  CCAGTTCCAG GACAGCTAGG ACTATACAGA GAAATCCTGT CTCGAAAAAG AAAAAGAAAA
  AAACAAAACG AAACAAAACA CCCCCCAAAG AACTGGCCTG ATAGTCTTCA CACAGCAGTA
  R
  TAGTTTTTTT TCTACCAAAA CCCTACCGGG AGGATACACT ACTAACACAT TCAATTTCCG
  AAAACTCAAC TTTGAAAACC TTCACATTAA CACACCCTCT AGAGAACTTC AGTACTATCT
  TCAGGCTAAA ATGTTTTCAC TCATCAATGG CCAGTCTCCT GTGACCTCTC TGCCCTATTT
  CTAAATTAAG TAGCTCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48396608	NES12265159	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	G	G	A	A	A		G	A	A	G		A
ss325520785	CHEV_18_6239859	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29881469					SNP	G	A	G	G	A	G	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48396608	NES12265159	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6239861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	821 bp proximal
Gm41664	predicted gene, 41664	818 bp upstream
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	1303 bp downstream
Tssr152354	transcription start site region 152354	1377 bp downstream
Tssr152355	transcription start site region 152355	1610 bp downstream
Tssr152356	transcription start site region 152356	1625 bp downstream