rs29881482 SNP Detail

Summary

• ID
  rs29881482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13089421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCAGA GGAAAGGGAG
  GCCATCTGGG GGACTTCTCT TTCTCCTCAA GCTTCCAGGC TGTGTGGCAA TGCTGCCCAC
  ACCACTCAGG GTGCAGCCTT CCCCTCAGTT AGTTCTCTCA GGAAACGCCC TCATGAACAC
  ACGCGGACAT GTCTCAGTCT CCCAGGCTGA CAATGGAGAT TAAACATCAC ACTGTGGAAG
  R
  ATATTCCAGG CAGGGGAAAA GGCCTGTGTG AAGACTGGGT GAGAGGGCCT TTCACCTTCC
  CTGTCTTCTA GTGTTTATTA ACCGGGAACG TGCCAACAAT GTCCTGGCGA GGACTCGGAG
  GGCAAACTCA TTTTTTGAAG AGTTCAAGAA AGGAAATCTG GAAAGAGAGT GTATGGAAGA
  AATTTGTTCT TATGAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47391446	NES11508483	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29881482					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391446	NES11508483	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13089421 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659844	regulatory region 659844	1573 bp distal
Rr659845	regulatory region 659845	793 bp distal
Rr659846	regulatory region 659846	1133 bp proximal
Tssr76329	transcription start site region 76329	1583 bp downstream
Tssr76330	transcription start site region 76330	1436 bp downstream
Tssr76331	transcription start site region 76331	117 bp downstream
Tssr76332	transcription start site region 76332	86 bp downstream
Tssr76333	transcription start site region 76333	62 bp downstream
Tssr76334	transcription start site region 76334	24 bp downstream
Tssr76335	transcription start site region 76335	116 bp upstream