rs29881988 SNP Detail

Summary

• ID
  rs29881988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123621427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCCCACT TATGGGGAAA
  TTAACGAATG GGGGCATCTT TGACATGATG ACCCTGTAGT GTTTTTCTCC TAGGACTACC
  CAAGGCTTCA CAAAGTGGCC AGGGCAGTGG CCCTTGGCCT ACAATCTTGG CTGTTGAAGA
  GTAGATATAC TATCAAGACC ACGTCTGGCC TGAAAAATAC CACACAGTAG ATTGTTACCA
  R
  CTGTGATCCC AGGTGTGGTT AATGGTGTCA CTTTGGATGA AAAGGCTGAG TCTTGTACCT
  TGTTCTTAGG GGCTCTGGGA CCTGAGAGTA ACGGCTGCAT GGAGCCAAGC GCACTGTGGA
  GCCCAAGGCC TCTGCCAAAG CTGCAGAACT GCTGAGCTGG GGGCACAGCT GATTTTCTTT
  CTTTTGCTTC TAATTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46349930	mCV23332204	ABI	CRAMUS_MOUSE	f	SNP		A	G		G
ss61241401	NES16861467	PERLEGEN	MM_PANEL2	f	SNP	A			G			A	A
ss323234331	CHEV_9_123701480	CHEVERUD	SCREENING_POP	f	SNP						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29881988					SNP	A	A	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61241401	NES16861467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123621427 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	296 bp upstream
Tssr92158	transcription start site region 92158	290 bp upstream
Tssr92159	transcription start site region 92159	266 bp upstream
Tssr92160	transcription start site region 92160	108 bp downstream
Tssr92161	transcription start site region 92161	125 bp downstream