rs29882238 SNP Detail

Summary

• ID
  rs29882238
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:20788097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CATAGAGTCA CAGTGGTTGT
  K
  GGTATCAATT GCTTCTGCTG AAATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39128670	mCV24006520	ABI	CRAMUS_MOUSE	f	SNP		G					T		G
ss61757691	NES17682685	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G		G	G	G	G		G	G	T	G		G
ss148771536	ENSMUSSNP1095587	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss324282842	CHEV_13_20695796	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29882238					SNP	T	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757691	NES17682685	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20788097 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	Intron
Tssr118599	transcription start site region 118599	1467 bp upstream
Tssr118600	transcription start site region 118600	1510 bp upstream