rs29882260 SNP Detail

Summary

• ID
  rs29882260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGAGGGAA GCCAAGTGGA
  TTCTCAGAAA AAGGGGGGAA GCCATCAAAG AGCTAAAGGT GATTAGAGGG GGATATCGAT
  TCCTTACTCT GCCAGAGGTT TAAGCAGGCA TGAGAGGAAT CTGTACCATG GCTGGCAGAA
  AGAGACCCAT TGCCTCTTGT AACCAGACAC TGGGGCTTTC CAGGAGCCCA GGGAGAGAGC
  Y
  GAGAAGAAAG GGGGCAGTGT GGTCTAGGAA AATTCAACTT GTCGCTGATT TGTGCCTGAT
  GCTTGCTGTC CGTCAGCAGC CTCCCTTACA AGCCTTTTTT CCTCTCTCTC CTTTTTTTCT
  CCCCTTGCCT TCTTCTTCAG TGAAGCCTAG GGGAGCCAGT AAAGATTAAA TGTGCTTTCT
  CAAAGGCAGC CACTTCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46350911	mCV23834249	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				C		C
ss61386159	NES16764746	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	C		T	C	C	C		C	C		T
ss136358660	ENSMUSSNP4135997	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss322927317	CHEV_9_41387903	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29882260					SNP	T	T	T	C	T	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386159	NES16764746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491116 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	549 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	316 bp distal
Rr677061	regulatory region 677061	within coordinates
Rr677062	regulatory region 677062	429 bp proximal
Rr677063	regulatory region 677063	1532 bp proximal
Rr677064	regulatory region 677064	1646 bp proximal
Rr677065	regulatory region 677065	1862 bp proximal
Tssr84512	transcription start site region 84512	151 bp downstream
Tssr84513	transcription start site region 84513	103 bp downstream
Tssr84514	transcription start site region 84514	30 bp upstream
Tssr84515	transcription start site region 84515	115 bp upstream
Tssr84516	transcription start site region 84516	150 bp upstream
Tssr84517	transcription start site region 84517	183 bp upstream
Tssr84518	transcription start site region 84518	883 bp upstream
Tssr84519	transcription start site region 84519	931 bp upstream
Tssr84520	transcription start site region 84520	1083 bp upstream
Tssr84521	transcription start site region 84521	1124 bp upstream
Tssr84522	transcription start site region 84522	1148 bp upstream
Tssr84523	transcription start site region 84523	1246 bp upstream
Tssr84524	transcription start site region 84524	1427 bp upstream
Tssr84525	transcription start site region 84525	1480 bp upstream
Tssr84526	transcription start site region 84526	1511 bp upstream
Tssr88995	transcription start site region 88995	297 bp upstream
Tssr88996	transcription start site region 88996	257 bp upstream
Tssr88997	transcription start site region 88997	966 bp downstream