rs29882329 SNP Detail

Summary

• ID
  rs29882329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110564506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCTGC CCTGAGCAGA
  GCATCAGTTT CAGAACATAA GGAGGCAGAA TAGACATCAC AGCTCAGTTT TCTCATCCTC
  ATTTTTGCTA TTCAGAACAT GAATTATCCT TTTCCCTCTT TCCTACAGCC AAACATTAAA
  TTTCTCATTC ATGTGAAAAT TTTGTACTGT ACCTTTGTTC TATATATCTA GTCTTCATTA
  Y
  TCATTATTGA ATGAATCCAG AATGTCTCAT TTACTCTTCG CAAACTCCCT ACAAAGGTGC
  CACTATTATT TATTTTTCAA AGAATCTGTA CATAACCAAA TATCCAGAAA AATGAGCTCA
  AGAGCATGTA CCTAGTAAGA TTTCATTCTT AGAAATGCTA GCAGCTTGAT TCCTGGGTGG
  GAAATTCCAG CATTTCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46891169	NES10709886	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	C		T
ss320873330	CHEV_3_110460108	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29882329					SNP	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891169	NES10709886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110564506 () rs orientation: forward

Symbol	Name	Function Class
Rr583481	regulatory region 583481	313 bp proximal