rs29882597 SNP Detail

Summary

• ID
  rs29882597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:43158697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG CCCTTTTCTT TCCCCTGTGA
  Y
  TTCTCATGGT TTGGGCCACA GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39128773	mCV22967225	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148934463	ENSMUSSNP1692554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29882597					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43158697 () rs orientation: forward

Symbol	Name	Function Class
Gm15809	predicted gene 15809	within coordinates
Phactr1	phosphatase and actin regulator 1	Intron
Rr388334	regulatory region 388334	387 bp downstream
Rr478223	regulatory region 478223	within coordinates