rs29882719 SNP Detail

Summary

• ID
  rs29882719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65369777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGCTATGA ACTGCAGGTT CTGTTGAAAC TCTGAAGGCC AAGTACATGC TCTCTCACAA
  CTAGCCAACT TACTGTCCAG CAACGCAAGG TCCAAGAAGA GCTGGGGAGC CTTAGCATCC
  TGGCCAGCGG GAGGAGGGGT TTCCTTGATA AAGCTTATCT CTGCCTCTTT CCTCACCAGC
  CTGAACAGGT GCTTCTGTTT TTTGTAAAGA ACAGAGTCAC GAGAAAGCAA ATCTGTCCTG
  AACACACTGC CCATGTTTCT TTTCATCCTG ACCAGTTTGG TCACAGTCTC AGCTAACTTT
  Y
  TGGGCCACAG ATTTTTTTTT TTTTTTTTAA GAATGTTTCT CTTGTGACTT GGAAAAGCAT
  CCGGCTTAAG TGGATGAAAG AGAGCTAGAA CAAACTTTCC TTTTCATACC CTTCACAGCT
  GCTTTAGCTT TGCAGCAGGT TTTTTTTTTT TTTTTTTCTT CCTAGCCGTC AGCTGGTCCT
  ACGCAACATT TGGCAACATT TGGTAACTGT CTCACCTTTC CTCACCACCC AACCAGCACA
  AGTGTTAGAA TCACCTGTCC TTGCAAAAGT GTCCTCACAG CTGTGTAGGA ACTCTTATGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46349841	mCV24186797	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss136567858	ENSMUSSNP3333055	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29882719					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65369777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	1041 bp distal
Rr401463	regulatory region 401463	1447 bp downstream
Rr681488	regulatory region 681488	1532 bp distal
Rr681489	regulatory region 681489	835 bp distal
Rr681490	regulatory region 681490	within coordinates
Spg21	SPG21, maspardin	within coordinates
Tssr2916	transcription start site region 2916	1578 bp downstream
Tssr85703	transcription start site region 85703	1512 bp downstream
Tssr85704	transcription start site region 85704	1502 bp downstream
Tssr85705	transcription start site region 85705	1144 bp downstream
Tssr85706	transcription start site region 85706	43 bp upstream
Tssr85707	transcription start site region 85707	170 bp upstream
Tssr85708	transcription start site region 85708	300 bp upstream