rs29882838 SNP Detail

Summary

• ID
  rs29882838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15198164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCTCGGAAA CTGGAAAGAC AGCCAGAGAG CTCGCTGGGT CCCGCTTTCC CATAGGAGGT
  ACTGTCCCAC TTCCAGCCAG CTTCCGCCCC CGACGCGCCC AGGCTCTGGG TGCTTCCTCG
  CGTCACCACC AACCTCACTC CCGGCCCTGG GGGTAGTGCC CTAGTGACAC CAGGACCTTA
  ACTATTCTAT TCGTTGGTGG CAGTAACCGG GGTGGTCATC CTAACTTTCT CCAGCGAATG
  TTCACTGGCT TGCCAGCCAG GCCTGAGACC CAAGGCCAGG AAGAACCGAT GGAGCCAGAT
  Y
  GCAGCAGTGC GCCCAAGTGC CTGGAGACAA CCTCGCCGGG TCCTTGCGTG CGTCATTGGA
  ATTTGCCTCT ATGTTTCAAT TCAGCTGTGG GGAGTCCTGC CTCAACTATT TGTTCCTTCT
  TTCCATGTTG CCTGTCTTAC CCCCCTTACC CCCGCTCCGA GGCTTTTATC ATTTTGTGCC
  ACAATAGGAA CCATCCATCA AGTTGTAATT TACAAGGAAT GTCAAATAAG AAAAAAGAAA
  GGCTAACTCT GGGCCCCGTG GCCATTAAAG TGGCTTTTCG TCGCCCTCCA AGAGCTTCCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39625386	mCV25032229	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29882838					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15198164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	within coordinates
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	508 bp upstream
Rr534350	regulatory region 534350	1093 bp distal
Tssr152510	transcription start site region 152510	1490 bp upstream
Tssr152511	transcription start site region 152511	1452 bp upstream
Tssr152512	transcription start site region 152512	993 bp upstream
Tssr152513	transcription start site region 152513	967 bp upstream
Tssr152514	transcription start site region 152514	952 bp upstream
Tssr152515	transcription start site region 152515	881 bp upstream
Tssr152516	transcription start site region 152516	772 bp upstream
Tssr152517	transcription start site region 152517	751 bp upstream
Tssr152518	transcription start site region 152518	733 bp upstream
Tssr152519	transcription start site region 152519	664 bp upstream
Tssr152520	transcription start site region 152520	631 bp upstream