rs29883059 SNP Detail

Summary

• ID
  rs29883059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43460414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC TTTTATATTA GCTGCTCTGC
  Y
  TCACACACAT GCACATGCAC GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39128188	mCV25004576	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148941331	ENSMUSSNP593921	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29883059					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43460414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5511	CpG island 5511	2000 bp distal
Gm52047	predicted gene, 52047	within coordinates
Rr271880	regulatory region 271880	1387 bp proximal
Rr276031	regulatory region 276031	414 bp distal
Rr281312	regulatory region 281312	1813 bp distal