rs29883240 SNP Detail

Summary

• ID
  rs29883240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66592350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC CTCTCCAACA CCAAGAAAAG
  Y
  AGTGTTCAAA TTTCGAACCC TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39626082	mCV23204003	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147332533	ENSMUSSNP3580411	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss325661079	CHEV_18_66618933	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29883240					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66592350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	within coordinates
Cpgi10161	CpG island 10161	1575 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	559 bp downstream
Rr539737	regulatory region 539737	676 bp distal
Rr539738	regulatory region 539738	867 bp distal
Rr539739	regulatory region 539739	813 bp distal
Rr539740	regulatory region 539740	within coordinates
Tssr151705	transcription start site region 151705	675 bp downstream