rs29883334 SNP Detail

Summary

• ID
  rs29883334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33096485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATCACT GCTATAATAA
  ACAAGCTATT GCAAAGGAGA ATTATTTTCC AAGAGGCAGA TTCAAGCTCA CTATTTTTAA
  ACTTAGGGAA ATAATCTTGA TTTTTAGTAA AGCAAGCAAA GGAAGAAAGA AACAAACAAA
  CTCTATAAAA CCCAACCTCC AAACAAGAAT GGTTGATTAC GGTGTTAACA TGTCAACATT
  Y
  CAATTACTCA GTGATTCTAA TACTGTGGAT AAATCTCTTA TAACTCATGT AATGAATTAT
  ACAATGTAGA TATGGAAAGT TATTAAAGAG AGTGTCACCA GTGGGATGCT TTTGAGGGAT
  TGTGCTGAAG GTTGTTTTCT CTCTTGGTCC ATTATTTTAT ACTTCAACTA AAGACATTAG
  TTAGAAAAAG GAAGGAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891759	NES10798839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29883334					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891759	NES10798839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33096485 () rs orientation: forward

Symbol	Name	Function Class
4930419G24Rik	RIKEN cDNA 4930419G24 gene	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575046	regulatory region 575046	1733 bp proximal
Rr575047	regulatory region 575047	1817 bp proximal