rs29883343 SNP Detail

Summary

• ID
  rs29883343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33096833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTATTT TATACTTCAA
  CTAAAGACAT TAGTTAGAAA AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG
  AAGGAAGGAA GGGAAGGAGG AAGGAAGGAA AGAAGGGAAG GAGAGAGGAA GGAAGGAAGG
  AATAAAGTGT GGCCACATCT TTTTTCCTGC CATCTTTCTG TCACAGCATG TGGCTCAGGA
  K
  CACCTGACTT CTTGAGTTTT CCTTTCTGTC CATCTGTAGG TGTCCATCAT CTGCTGGTGT
  TCATTTGTTC CTAGGCTGCT TCAGTATCCT CTTAGATAAC AATTTTATCT CCTTTGGTAG
  TAATACAGTA AAGTCAAACT AGAAGTACTT AGAGGAGCCT GGGCTTTCAT GCACTTACAT
  ATTCCCATGT TTCGAAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891768	NES10798591	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29883343					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891768	NES10798591	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33096833 () rs orientation: forward

Symbol	Name	Function Class
4930419G24Rik	RIKEN cDNA 4930419G24 gene	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575046	regulatory region 575046	1385 bp proximal
Rr575047	regulatory region 575047	1469 bp proximal