rs29884358 SNP Detail

Summary

• ID
  rs29884358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86763643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT ATGTACGTAT TACTATATGA
  Y
  CCCCGCAGTC CTGCACAGTA TTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46350242	mCV24288047	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136762487	ENSMUSSNP5625837	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29884358					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86763643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	494 bp distal
Rr684153	regulatory region 684153	1187 bp distal
Rr684154	regulatory region 684154	651 bp distal
Snap91	synaptosomal-associated protein 91	936 bp upstream
Tssr90794	transcription start site region 90794	1218 bp upstream
Tssr90795	transcription start site region 90795	1178 bp upstream
Tssr90796	transcription start site region 90796	1123 bp upstream
Tssr90797	transcription start site region 90797	1106 bp upstream
Tssr90798	transcription start site region 90798	1088 bp upstream
Tssr90799	transcription start site region 90799	931 bp upstream
Tssr90800	transcription start site region 90800	878 bp upstream