rs29884425 SNP Detail

Summary

• ID
  rs29884425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9617422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGGACT GACTTCTATC
  CCTAGCACTG CATAACCTGG GTATGGTAGT GATGAACTTT TATAATCCTT ACACTTGGGA
  GGTAGAGGCA GGAAGATTAG AAATTCAAGG TCATCTTTGG CTACATGTTG AGTATGGGAC
  CAGTCTGGAA CACAGGAACC GGTCTCAACA AACAAAGGAA CTAGTAAGCT TAATTTCTTT
  W
  AAAAGTTATA ATTTGCTTAG GCAACAATTA AATTACTTTA TCCTGTGCTA GGTCTTCATG
  TCCTCTCTCC ATACTCCTCA GTAGATAATT TAGACTCATT AAAGGAAGAC ACTGACATGC
  AGTCAAGCTA GAAAAGTCAC CATTGTAGTT AATCACCTCC CAAAGGCAAG TCTATATACC
  TTTTCTTGTA CAAAGGCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39625593	mCV24399119	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss146597849	ENSMUSSNP6967111	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29884425					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9617422 () rs orientation: forward

Symbol	Name	Function Class
Cetn1	centrin 1	997 bp downstream
Cpgi9693	CpG island 9693	1919 bp proximal
Gm58470	predicted gene, 58470	992 bp upstream