rs29884858 SNP Detail

Summary

• ID
  rs29884858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144993268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA CCCGGTCCCA AGTCTGCCTT
  R
  TATCTTCCCG CAGCTTAGGG AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45873562	mCV23990298	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss133960850	ENSMUSSNP3978355	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322067431	CHEV_6_144996062	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29884858					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144993268 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	571 bp proximal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	17 bp upstream
Tssr2055	transcription start site region 2055	1505 bp downstream
Tssr59519	transcription start site region 59519	996 bp upstream
Tssr64030	transcription start site region 64030	19 bp upstream
Tssr64031	transcription start site region 64031	within coordinates
Tssr64032	transcription start site region 64032	63 bp downstream
Tssr64033	transcription start site region 64033	94 bp downstream
Tssr64034	transcription start site region 64034	122 bp downstream
Tssr64035	transcription start site region 64035	183 bp downstream
Tssr64036	transcription start site region 64036	1043 bp downstream
Tssr64037	transcription start site region 64037	1059 bp downstream
Tssr64038	transcription start site region 64038	1114 bp downstream
Tssr64039	transcription start site region 64039	1134 bp downstream
Tssr64040	transcription start site region 64040	1153 bp downstream
Tssr64041	transcription start site region 64041	1168 bp downstream
Tssr64042	transcription start site region 64042	1188 bp downstream
Tssr64043	transcription start site region 64043	1207 bp downstream
Tssr64044	transcription start site region 64044	1267 bp downstream
Tssr64045	transcription start site region 64045	1297 bp downstream