rs29884980 SNP Detail

Summary

• ID
  rs29884980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31767451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GGGACAGAGT GCTAGCGGCC
  S
  GGCTGCGGCT GCGGGTCCGG AGCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39625998	mCV22295790	ABI	CRAMUS_MOUSE	f	SNP		C	G					G
ss63012829	NES17430066	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	C	G	C		G	G	G	G		G	G	G	G		G
ss146906933	ENSMUSSNP545139	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss325576684	CHEV_18_31794052	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29884980					SNP	G	C	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012829	NES17430066	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31767451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	within coordinates
Gm58914	predicted gene, 58914	within coordinates
Rr370349	regulatory region 370349	110 bp upstream
Rr405571	regulatory region 405571	within coordinates
Rr405572	regulatory region 405572	399 bp upstream
Rr535275	regulatory region 535275	1453 bp distal
Rr535276	regulatory region 535276	1883 bp distal
Rr535277	regulatory region 535277	1835 bp distal
Rr535278	regulatory region 535278	208 bp distal
Rr535279	regulatory region 535279	5 bp distal
Rr535280	regulatory region 535280	within coordinates
Rr535281	regulatory region 535281	62 bp proximal
Rr535282	regulatory region 535282	576 bp proximal
Sap130	Sin3A associated protein	within coordinates
Tssr150348	transcription start site region 150348	35 bp downstream
Tssr150349	transcription start site region 150349	27 bp downstream
Tssr150350	transcription start site region 150350	8 bp downstream
Tssr150351	transcription start site region 150351	676 bp upstream
Tssr152716	transcription start site region 152716	371 bp downstream