rs29885233 SNP Detail

Summary

• ID
  rs29885233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCGGT GCAACTCAGC
  CTGCTCTGTG TTGTCCTGGC CAGCCTCCTG CTCCCTGGGA AAGGTGGTAA GTACTCCAGT
  CCTTCACGGT GAAGAGCGGC CCGGGGAGAG GGGGTGAGAG TGGGTGGGAG GGTGGGAGGG
  TGAAATGCTT GGTTCGCTGA CCAGCGACAG GCTGGCTTCT AAAGGTATAC ATAGAGCCAG
  Y
  TGCGAGTACC CATGCAGAGC ACATGGAGAT TTGAATGAAA GGAAACGGAG AAAGGAGAGG
  AAGGGAATGG AGACAAAGTG AGAGAGAAAC CATGATAAGG AGAGAGGGGA GGGCAGAGAA
  AATGACACCA AGACAAAGCC ACCCCAGACA TAGAAGACAC AGGAGCCAAG GCCCTGAGCT
  TGGGGAGCTC GGCTGGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47391404	NES11508726	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29885233					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391404	NES11508726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088042 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	710 bp distal
Rr659844	regulatory region 659844	194 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	739 bp downstream
Tssr76326	transcription start site region 76326	690 bp downstream
Tssr76327	transcription start site region 76327	680 bp downstream
Tssr76328	transcription start site region 76328	652 bp downstream
Tssr76329	transcription start site region 76329	204 bp downstream
Tssr76330	transcription start site region 76330	57 bp downstream
Tssr76331	transcription start site region 76331	1261 bp upstream
Tssr76332	transcription start site region 76332	1284 bp upstream
Tssr76333	transcription start site region 76333	1316 bp upstream
Tssr76334	transcription start site region 76334	1327 bp upstream
Tssr76335	transcription start site region 76335	1495 bp upstream