rs29885677 SNP Detail

Summary

• ID
  rs29885677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64696903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATAACAC GTCAGTCGGA TGGAAAGAGC
  TACGTTTCCA TAGTTACGTT AAAACATAAC AAGCACGAAG GGGAAACGTC TTTTGGTGGT
  TGATAAGCAA AAGGGAAGTG AGTCTTGTGC TAAAGTGTTA CCAAGTTGTT TTTTTTTTTT
  W
  AAGAAAATTT CATTGCATTT ATGTATTTTT GTGCGTTTAT GATGGGTTTC ACAgcgtgta
  tgtgtgtggg atgtggggtg gggagacagg gacggcactc agaggatagc ttttcaggag
  tccgttattt ccttccttta tgtgggtttc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46350171	mCV25282059	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss322985861	CHEV_9_64637428	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29885677					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64696903 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	within coordinates
Rr681316	regulatory region 681316	within coordinates
Rr681317	regulatory region 681317	1074 bp proximal
Rr681318	regulatory region 681318	1643 bp proximal
Tssr2909	transcription start site region 2909	1173 bp downstream
Tssr85622	transcription start site region 85622	28 bp upstream
Tssr85623	transcription start site region 85623	42 bp upstream
Tssr85624	transcription start site region 85624	1335 bp upstream
Tssr90157	transcription start site region 90157	1201 bp downstream