rs29885883 SNP Detail

Summary

• ID
  rs29885883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33098505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCAGGG GGCAGCAGAT
  GAAAGTCAGT TCTGGGCCAG TTTCAAGGAT GGAACATTCC AGATGGAAAA CTCCTTAAAG
  TGAAATTTGA AAAAGCCAAG TGTTGATTCT GACTCTCCCC TGTATGTCTG CTTTAGAAAA
  GAAGGCTGTC GAAGGTACAA CGGATTCTGC ATTTACATAG GTCATGCTCT GTACTGTACA
  Y
  ATTCTATAGT CGATTAAGTT GTGCCTGGTA AAATTACCAT GAAGTCTCTA AAGCTAGGAC
  TGTCATGGTG TTACCTCTCA TGGTGCAGAG TGTATTTAAG ATATAGGACG CCCCCTTTTA
  ACATACACAA ATGGCAGGCA CGTGCTTAGC CAGAAACAGC CATTGGTTTG GAGAAACGAT
  GTGTGGATAT TAAGACTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891798	NES10798461	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29885883					SNP	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891798	NES10798461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33098505 () rs orientation: forward

Symbol	Name	Function Class
4930419G24Rik	RIKEN cDNA 4930419G24 gene	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575046	regulatory region 575046	74 bp distal
Rr575047	regulatory region 575047	182 bp distal