rs29886314 SNP Detail

Summary

• ID
  rs29886314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:119498157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGTAGGC ATGAAGGGTG TGGAGTATCA AGTCTAAGAG
  AAATTTAGGA TGAATCCACT TTAAAAGCCT AAAACTATGG TGGGCTTGTT TTTGATTGGT
  Y
  GTTCACTGTT TTGTAATTGC ATGTGGAAGT GTGGAGAGCG ATGGAAGGTA CACACGGACA
  ATAAGAGCTC AGCCTGTCAG GGTTCTCAGA GATCAGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss39128419	mCV23813990	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss52698266	NES15540383	PERLEGEN	MM_PANEL2	f	SNP				T		C	C		T
ss145469248	ENSMUSSNP2720241	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324555659	CHEV_13_120150428	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29886314					SNP	C	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52698266	NES15540383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:119498157 () rs orientation: forward

Symbol	Name	Function Class
Nnt	nicotinamide nucleotide transhydrogenase	within coordinates
Rr270671	regulatory region 270671	1244 bp proximal
Rr285835	regulatory region 285835	1725 bp proximal