rs29886563 SNP Detail

Summary

• ID
  rs29886563
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86346998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCCACAG TTACTAGAAC CCGGACAGGG TGGGAGCACG
  TGCGGCCGTA GCAGGCGGCT GGCTCCCAGG CCAAGGTAGC GCGAAGGGAT CCGGCGGCGG
  M
  CGTCTGTCGG CTAGAGCGCC ACCTACCGGG AAGAGAGCGC ACTGCCGAGG CGCCGACCTT
  GCCCCAGTGG CCGCTCTAGT AGGACAGGTG CGACCCAGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46350079	mCV23664555	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss136756051	ENSMUSSNP3454781	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29886563					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86346998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	within coordinates
Cpgi22102	CpG island 22102	1972 bp proximal
Rr684095	regulatory region 684095	6 bp distal
Rr684096	regulatory region 684096	within coordinates
Rr684097	regulatory region 684097	13 bp proximal
Rr684098	regulatory region 684098	1719 bp proximal
Tssr90780	transcription start site region 90780	2 bp upstream
Tssr90781	transcription start site region 90781	within coordinates
Ube3d	ubiquitin protein ligase E3D	within coordinates