rs29886688 SNP Detail

Summary

• ID
  rs29886688
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96319186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCATGC CAAACACCCA
  CATTCCATCA GTCTCCAGCT GAAAAAATTA ATTGCCTGCC CTTTATGCCA TTTGTCTTCG
  GCATGTGAAC TGCAGTCTCA GAGTGGGAGG GGAGGAGAGA ACGGCAGGCA GCTTAGAGCG
  GGGGTTCAAC CACGCTGATC TCTTGGCTGC TCCTTTAACT CCTGTGGTGA CGGATCGGAT
  S
  GGAGCATTAG TCTCTGGCAT CAAAACAGTC TCTCGGTCCA TGTGACCAGC ACTGCCGTTG
  CCGCACTGTA AAGCCCACAA GAATCGGCAG CCCACAGACC CATCAGTGGA AGCTTTGTGT
  TTGCTTCGTG TGGGTTTGCT GGTGGCCTTT GGCATAGCCA CACGTTCAAC ACCTGCTGGA
  GCAAAACAAA CCATGCCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46351009	mCV25429667	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss136832080	ENSMUSSNP3711754	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	C
ss323108978	CHEV_9_96337552	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29886688					SNP	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96319186 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	within coordinates
Cpgi22164	CpG island 22164	370 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	547 bp upstream
Rr368835	regulatory region 368835	863 bp upstream
Rr684963	regulatory region 684963	57 bp proximal
Rr684964	regulatory region 684964	558 bp proximal
Rr684965	regulatory region 684965	684 bp proximal
Tssr90963	transcription start site region 90963	1028 bp downstream